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…s) were processed using the DRAGEN Microbial Amplicon pipeline (Illumina). Consensus sequences were subsequently evaluated using Nextcla…

…ethods Specimen processing Molecular profiling was performed at Caris Life Sciences (Phoenix, Arizona, USA), a College of American Pathologists (CA…

…and mRNAs were performed using high-throughput, new generation (Illumina) sequencing, and established miRNA and mRNA library.Results Alt…

…-DNA samples were collected between March 2021 and July 2025 at Bambino Gesù Children’s Hospital (Rome, Italy). Next-generation sequencing (NGS) was performed w…

…cruited either as part of population-based newborn screening at St Joseph’s Hospital for specific human leukocyte antigen (HLA) genotypes known to h…

…and sequenced using DNA Library Prep on the iSeq100 instrument (Illumina). DRMs and susceptibility were interpreted with Stanford HIVdb …

…ection were enrolled. Full-length HDV genomes were sequenced by Illumina (median [IQR] reads/patient: 69,282 [38,127–181,165]). Genotype…

…eq xHYB HIV-1 kit (Qiagen) and sequenced on the MiSeq platform (Illumina). A fully reproducible analysis pipeline was implemented in Sna…

…samples were collected at baseline and month 6. RNA sequencing (Illumina) was used to quantify gene expression. Gene set enrichment anal…

…ntimicrobial agents. Whole genome sequencing was performed with Illumina and Oxford Nanopore Technology instruments. A phylogeny contain…